![]() High-performance general purpose sequence similarity search tool Pairwise comparison of profile Hidden Markov models very sensitive Local and global search with profile Hidden Markov models, more sensitive than PSI-BLASTĭurbin R, Eddy SR, Krogh A, Mitchison G Genoogle uses indexing and parallel processing techniques for searching DNA and Proteins sequences. Software for ultra fast local DNA sequence motif search and pairwise alignment for NGS data (FASTA, FASTQ). ![]() Global:Global (GG), Global:Local (GL) alignment with statistics Local search with fast k-tuple heuristic, slower but more sensitive than BLAST GPU accelerated Smith Waterman algorithm for multiple shared-host GPUsīLASTX and BLASTP aligner based on double indexingīuchfink B, Xie C, Huson DH, Reuter K, Drost HG Position-specific iterative version CSI-BLAST more sensitive than PSI-BLAST Sequence-context specific BLAST, more sensitive than BLAST, FASTA, and SSEARCH. īurdyshaw CE, Sawyer S, Horton MD, Brook RG, Rekapalli B Distributed with the latest version of BLAST, this wrapper facilitates parallelization of the algorithm on modern hybrid architectures with many nodes and many cores within each node. ![]() NCBI compliant multinode and multicore BLAST wrapper. Local search with fast k-tuple heuristic (Basic Local Alignment Search Tool)Īltschul SF, Gish W, Miller W, Myers EW, Lipman DJ
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